Protein Structure Prediction in 1D, 2D, and 3D

Abbreviations 1D D one-dimensional; 1D structure D one-dimensional (e.g., sequence or string of secondary structure); 2D D two-dimensional; 2D structure D two-dimensional (e.g., interresidue distances); 3D D three-dimensional; 3D structure D three-dimensional (coordinates of protein structure); PDB D Protein Data Bank of experimentally determined 3D structures of proteins; SWISS-PROT D database of protein sequences; T D target used for homology modeling (protein of known 3D structure); U D protein sequence of unknown 3D structure (e.g., search sequence).